TY - JOUR
T1 - Reproducibility and intercorrelation of graph theoretical measures in structural brain connectivity networks
AU - Roine, Timo
AU - Jeurissen, Ben
AU - Perrone, Daniele
AU - Aelterman, Jan
AU - Philips, Wilfried
AU - Sijbers, Jan
AU - Leemans, Alexander
N1 - Funding Information:
This work was supported by the Fund for Scientific Research-Flanders (FWO), and by the Interuniversity Attraction Poles Program (P7/11) initiated by the Belgian Science Policy Office. In addition, T.R. received support from the Instrumentarium Science Foundation (Finland), the Automation Foundation (Finland), the Finnish Foundation for Technology Promotion, and Emil Aaltonen Foundation (Finland). The research of A.L. is supported by VIDI Grant 639.072.411 from the Netherlands Organisation for Scientific Research (NWO). B.J. is a postdoctoral fellow supported by the Research Foundation Flanders (FWO Vlaanderen). We acknowledge the computational resources provided by the Aalto Science-IT project. The authors report no conflicts of interest.
Funding Information:
Jan Aelterman is a post-doctoral researcher in the “Image Processing and Interpretation” research group, at the Department of Telecommunications and Information Processing, Ghent University, Belgium. He is currently supported by a Ghent University BOF postdoctoral fellowship (BOF15/PDO/003). His research focuses on restoration of natural images, with an emphasis on (MRI) reconstruction.
Funding Information:
The replication data were provided by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University.
Publisher Copyright:
© 2018
PY - 2019/2/1
Y1 - 2019/2/1
N2 - Diffusion-weighted magnetic resonance imaging can be used to non-invasively probe the brain microstructure. In addition, recent advances have enabled the identification of complex fiber configurations present in most of the white matter. This has improved the investigation of structural connectivity with tractography methods. Whole-brain structural connectivity networks, or connectomes, are reconstructed by parcellating the gray matter and performing tractography to determine connectivity between these regions. These complex networks can be analyzed with graph theoretical methods, which measure their global and local properties. However, as these tools have only recently been applied to structural brain networks, there is little information about the reproducibility and intercorrelation of network properties, connectivity weights and fiber tractography reconstruction parameters in the brain. We studied the reproducibility and correlation in structural brain connectivity networks reconstructed with constrained spherical deconvolution based probabilistic streamlines tractography. Diffusion-weighted data from 19 subjects were acquired with b = 2800 s/mm2 and 75 gradient orientations. Intrasubject variability was computed with residual bootstrapping. Our findings indicate that the reproducibility of graph theoretical metrics is generally excellent with the exception of betweenness centrality. A reconstruction density of approximately one million streamlines is necessary for excellent reproducibility, but the reproducibility increases further with higher densities. The reproducibility decreases, but only slightly, when switching to a higher order in constrained spherical deconvolution. Moreover, in binary networks, using sufficiently high threshold values improves the reproducibility. We show that multiple network properties and connectivity weights are highly intercorrelated. The experiments were replicated by using a test-retest dataset of 44 healthy subjects provided by the Human Connectome Project. In conclusion, our results provide guidelines for reproducible investigation of structural brain networks.
AB - Diffusion-weighted magnetic resonance imaging can be used to non-invasively probe the brain microstructure. In addition, recent advances have enabled the identification of complex fiber configurations present in most of the white matter. This has improved the investigation of structural connectivity with tractography methods. Whole-brain structural connectivity networks, or connectomes, are reconstructed by parcellating the gray matter and performing tractography to determine connectivity between these regions. These complex networks can be analyzed with graph theoretical methods, which measure their global and local properties. However, as these tools have only recently been applied to structural brain networks, there is little information about the reproducibility and intercorrelation of network properties, connectivity weights and fiber tractography reconstruction parameters in the brain. We studied the reproducibility and correlation in structural brain connectivity networks reconstructed with constrained spherical deconvolution based probabilistic streamlines tractography. Diffusion-weighted data from 19 subjects were acquired with b = 2800 s/mm2 and 75 gradient orientations. Intrasubject variability was computed with residual bootstrapping. Our findings indicate that the reproducibility of graph theoretical metrics is generally excellent with the exception of betweenness centrality. A reconstruction density of approximately one million streamlines is necessary for excellent reproducibility, but the reproducibility increases further with higher densities. The reproducibility decreases, but only slightly, when switching to a higher order in constrained spherical deconvolution. Moreover, in binary networks, using sufficiently high threshold values improves the reproducibility. We show that multiple network properties and connectivity weights are highly intercorrelated. The experiments were replicated by using a test-retest dataset of 44 healthy subjects provided by the Human Connectome Project. In conclusion, our results provide guidelines for reproducible investigation of structural brain networks.
KW - Connectome
KW - Constrained spherical deconvolution
KW - Diffusion magnetic resonance imaging
KW - Reproducibility
KW - Tractography
KW - Reproducibility of Results
KW - Algorithms
KW - Humans
KW - Image Processing, Computer-Assisted/methods
KW - Diffusion Magnetic Resonance Imaging/methods
KW - Connectome/methods
KW - Echo-Planar Imaging
UR - https://www.scopus.com/pages/publications/85056833440
U2 - 10.1016/j.media.2018.10.009
DO - 10.1016/j.media.2018.10.009
M3 - Article
C2 - 30471463
AN - SCOPUS:85056833440
SN - 1361-8415
VL - 52
SP - 56
EP - 67
JO - Medical Image Analysis
JF - Medical Image Analysis
ER -