Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil

Auke W. de Jong; Elaine C. Francisco; João Nóbrega de Almeida; Igor B. Brandão; Felicidade M. Pereira; Pedro H.Presta Dias; Magda M. de Miranda Costa; Regiane T. de Souza Jordão; Duong Vu; Arnaldo L. Colombo; Ferry Hagen

doi:10.1007/s11046-021-00593-7

Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil

Auke W. de Jong
, Elaine C. Francisco
, João Nóbrega de Almeida
, Igor B. Brandão
, Felicidade M. Pereira
, Pedro H.Presta Dias
, Magda M. de Miranda Costa
, Regiane T. de Souza Jordão
, Duong Vu
, Arnaldo L. Colombo
, Ferry Hagen^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

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Abstract

Candida auris has been reported worldwide, but only in December 2020, the first strain from a COVID-19 patient in Brazil was isolated. Here, we describe the genome sequence of this susceptible C. auris strain and performed variant analysis of the genetic relatedness with strains from other geographic localities.

Original language	English
Pages (from-to)	883-887
Number of pages	5
Journal	Mycopathologia
Volume	186
Issue number	6
DOIs	https://doi.org/10.1007/s11046-021-00593-7
Publication status	Published - Dec 2021

Keywords

Candida auris
De novo genome assembly
Emerging pathogen
Nanopore sequencing
Variant calling

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de Jong, A. W., Francisco, E. C., de Almeida, J. N., Brandão, I. B., Pereira, F. M., Dias, P. H. P., de Miranda Costa, M. M., de Souza Jordão, R. T., Vu, D., Colombo, A. L., & Hagen, F. (2021). Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil. Mycopathologia, 186(6), 883-887. https://doi.org/10.1007/s11046-021-00593-7

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title = "Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil",

abstract = "Candida auris has been reported worldwide, but only in December 2020, the first strain from a COVID-19 patient in Brazil was isolated. Here, we describe the genome sequence of this susceptible C. auris strain and performed variant analysis of the genetic relatedness with strains from other geographic localities.",

keywords = "Candida auris, De novo genome assembly, Emerging pathogen, Nanopore sequencing, Variant calling",

author = "\{de Jong\}, \{Auke W.\} and Francisco, \{Elaine C.\} and \{de Almeida\}, \{Jo{\~a}o N{\'o}brega\} and Brand{\~a}o, \{Igor B.\} and Pereira, \{Felicidade M.\} and Dias, \{Pedro H.Presta\} and \{de Miranda Costa\}, \{Magda M.\} and \{de Souza Jord{\~a}o\}, \{Regiane T.\} and Duong Vu and Colombo, \{Arnaldo L.\} and Ferry Hagen",

note = "Publisher Copyright: {\textcopyright} 2021, The Author(s).",

year = "2021",

month = dec,

doi = "10.1007/s11046-021-00593-7",

language = "English",

volume = "186",

pages = "883--887",

journal = "Mycopathologia",

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de Jong, AW, Francisco, EC, de Almeida, JN, Brandão, IB, Pereira, FM, Dias, PHP, de Miranda Costa, MM, de Souza Jordão, RT, Vu, D, Colombo, AL & Hagen, F 2021, 'Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil', Mycopathologia, vol. 186, no. 6, pp. 883-887. https://doi.org/10.1007/s11046-021-00593-7

TY - JOUR

T1 - Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil

AU - de Jong, Auke W.

AU - Francisco, Elaine C.

AU - de Almeida, João Nóbrega

AU - Brandão, Igor B.

AU - Pereira, Felicidade M.

AU - Dias, Pedro H.Presta

AU - de Miranda Costa, Magda M.

AU - de Souza Jordão, Regiane T.

AU - Vu, Duong

AU - Colombo, Arnaldo L.

AU - Hagen, Ferry

PY - 2021/12

Y1 - 2021/12

N2 - Candida auris has been reported worldwide, but only in December 2020, the first strain from a COVID-19 patient in Brazil was isolated. Here, we describe the genome sequence of this susceptible C. auris strain and performed variant analysis of the genetic relatedness with strains from other geographic localities.

AB - Candida auris has been reported worldwide, but only in December 2020, the first strain from a COVID-19 patient in Brazil was isolated. Here, we describe the genome sequence of this susceptible C. auris strain and performed variant analysis of the genetic relatedness with strains from other geographic localities.

KW - Candida auris

KW - De novo genome assembly

KW - Emerging pathogen

KW - Nanopore sequencing

KW - Variant calling

UR - https://www.scopus.com/pages/publications/85117451346

U2 - 10.1007/s11046-021-00593-7

DO - 10.1007/s11046-021-00593-7

M3 - Article

AN - SCOPUS:85117451346

SN - 0301-486X

VL - 186

SP - 883

EP - 887

JO - Mycopathologia

JF - Mycopathologia

IS - 6

ER -

Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil

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Keywords

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