Diffusion MRI acquisition for tractography: Beyond the in vivo adult human brain

Jennifer S.W. Campbell; Steven H. Baete; Julien Cohen-Adad; J. Donald Tournier; Filip Szczepankiewicz; Christian Beaulieu; Corey A. Baron; Merry Mani; Kawin Setsompop; Congyu Liao; Christine L. Tardif; Sjoerd B. Vos; Anastasia Yendiki; Ilana R. Leppert; Els Fieremans; Alberto De Luca; Alexander Leemans; G. Bruce Pike

doi:10.1016/B978-0-12-818894-1.00026-4

Diffusion MRI acquisition for tractography: Beyond the in vivo adult human brain

Jennifer S.W. Campbell, Steven H. Baete, Julien Cohen-Adad, J. Donald Tournier, Filip Szczepankiewicz, Christian Beaulieu, Corey A. Baron, Merry Mani, Kawin Setsompop, Congyu Liao, Christine L. Tardif, Sjoerd B. Vos, Anastasia Yendiki, Ilana R. Leppert, Els Fieremans, Alberto De Luca, Alexander Leemans, G. Bruce Pike

Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

Abstract

This is the third of three chapters on diffusion MRI acquisition for tractography. Tractography is performed extensively in the in vivo adult brain, and sequences used for the in vivo adult brain have been covered in detail in Chapter 7. However, tractography is also performed in ex vivo human brain, in both the in vivo and ex vivo animal brain of various nonhuman species, in the human brain during all stages of development, and outside the brain. All these applications require some modification of the diffusion encoding sequence. This chapter outlines considerations for scanning for the purpose of tractography in these cases.

Original language	English
Title of host publication	Handbook of Diffusion MR Tractography
Subtitle of host publication	Imaging Methods, Biophysical Models, Algorithms and Applications
Publisher	Elsevier
Chapter	8
Pages	143-149
Number of pages	7
ISBN (Electronic)	9780128188941
ISBN (Print)	9780128188958
DOIs	https://doi.org/10.1016/B978-0-12-818894-1.00026-4
Publication status	Published - 1 Jan 2025

Keywords

Body tractography
Brain tractography
Diffusion MRI
Ex vivo tractography
Nonhuman primates
Pediatric tractography
Tractography

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10.1016/B978-0-12-818894-1.00026-4

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Campbell, J. S. W., Baete, S. H., Cohen-Adad, J., Tournier, J. D., Szczepankiewicz, F., Beaulieu, C., Baron, C. A., Mani, M., Setsompop, K., Liao, C., Tardif, C. L., Vos, S. B., Yendiki, A., Leppert, I. R., Fieremans, E., De Luca, A., Leemans, A., & Pike, G. B. (2025). Diffusion MRI acquisition for tractography: Beyond the in vivo adult human brain. In Handbook of Diffusion MR Tractography: Imaging Methods, Biophysical Models, Algorithms and Applications (pp. 143-149). Elsevier. https://doi.org/10.1016/B978-0-12-818894-1.00026-4

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abstract = "This is the third of three chapters on diffusion MRI acquisition for tractography. Tractography is performed extensively in the in vivo adult brain, and sequences used for the in vivo adult brain have been covered in detail in Chapter 7. However, tractography is also performed in ex vivo human brain, in both the in vivo and ex vivo animal brain of various nonhuman species, in the human brain during all stages of development, and outside the brain. All these applications require some modification of the diffusion encoding sequence. This chapter outlines considerations for scanning for the purpose of tractography in these cases.",

keywords = "Body tractography, Brain tractography, Diffusion MRI, Ex vivo tractography, Nonhuman primates, Pediatric tractography, Tractography",

author = "Campbell, {Jennifer S.W.} and Baete, {Steven H.} and Julien Cohen-Adad and Tournier, {J. Donald} and Filip Szczepankiewicz and Christian Beaulieu and Baron, {Corey A.} and Merry Mani and Kawin Setsompop and Congyu Liao and Tardif, {Christine L.} and Vos, {Sjoerd B.} and Anastasia Yendiki and Leppert, {Ilana R.} and Els Fieremans and {De Luca}, Alberto and Alexander Leemans and Pike, {G. Bruce}",

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doi = "10.1016/B978-0-12-818894-1.00026-4",

language = "English",

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Campbell, JSW, Baete, SH, Cohen-Adad, J, Tournier, JD, Szczepankiewicz, F, Beaulieu, C, Baron, CA, Mani, M, Setsompop, K, Liao, C, Tardif, CL, Vos, SB, Yendiki, A, Leppert, IR, Fieremans, E, De Luca, A , Leemans, A & Pike, GB 2025, Diffusion MRI acquisition for tractography: Beyond the in vivo adult human brain. in Handbook of Diffusion MR Tractography: Imaging Methods, Biophysical Models, Algorithms and Applications. Elsevier, pp. 143-149. https://doi.org/10.1016/B978-0-12-818894-1.00026-4

Diffusion MRI acquisition for tractography: Beyond the in vivo adult human brain. / Campbell, Jennifer S.W.; Baete, Steven H.; Cohen-Adad, Julien et al.
Handbook of Diffusion MR Tractography: Imaging Methods, Biophysical Models, Algorithms and Applications. Elsevier, 2025. p. 143-149.

Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

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AU - Szczepankiewicz, Filip

AU - Beaulieu, Christian

AU - Baron, Corey A.

AU - Mani, Merry

AU - Setsompop, Kawin

AU - Liao, Congyu

AU - Tardif, Christine L.

AU - Vos, Sjoerd B.

AU - Yendiki, Anastasia

AU - Leppert, Ilana R.

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AU - De Luca, Alberto

AU - Leemans, Alexander

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AB - This is the third of three chapters on diffusion MRI acquisition for tractography. Tractography is performed extensively in the in vivo adult brain, and sequences used for the in vivo adult brain have been covered in detail in Chapter 7. However, tractography is also performed in ex vivo human brain, in both the in vivo and ex vivo animal brain of various nonhuman species, in the human brain during all stages of development, and outside the brain. All these applications require some modification of the diffusion encoding sequence. This chapter outlines considerations for scanning for the purpose of tractography in these cases.

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BT - Handbook of Diffusion MR Tractography

PB - Elsevier

ER -

Diffusion MRI acquisition for tractography: Beyond the in vivo adult human brain

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Keywords

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