TY - JOUR
T1 - Deep Learning-Based Regression and Classification for Automatic Landmark Localization in Medical Images
AU - Noothout, Julia M H
AU - De Vos, Bob D
AU - Wolterink, Jelmer M
AU - Postma, Elbrich M
AU - Smeets, Paul A M
AU - Takx, Richard A P
AU - Leiner, Tim
AU - Viergever, Max A
AU - Isgum, Ivana
N1 - Funding Information:
Manuscript received June 10, 2020; accepted July 8, 2020. Date of publication July 13, 2020; date of current version November 30, 2020. This work was supported in part by the Dutch Technology Foundation through the Research Program Deep Learning for Medical Image Analysis with contribution by Philips Healthcare under Project P15-26. (Corresponding author: Julia M. H. Noothout.) Julia M. H. Noothout, Bob D. de Vos, and Ivana Išgum are with the Image Sciences Institute, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands, and also with the Amsterdam UMC, Department of Biomedical Engineering and Physics, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands (e-mail: [email protected]; [email protected]; [email protected]).
Publisher Copyright:
© 1982-2012 IEEE.
Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2020/12
Y1 - 2020/12
N2 - In this study, we propose a fast and accurate method to automatically localize anatomical landmarks in medical images. We employ a global-to-local localization approach using fully convolutional neural networks (FCNNs). First, a global FCNN localizes multiple landmarks through the analysis of image patches, performing regression and classification simultaneously. In regression, displacement vectors pointing from the center of image patches towards landmark locations are determined. In classification, presence of landmarks of interest in the patch is established. Global landmark locations are obtained by averaging the predicted displacement vectors, where the contribution of each displacement vector is weighted by the posterior classification probability of the patch that it is pointing from. Subsequently, for each landmark localized with global localization, local analysis is performed. Specialized FCNNs refine the global landmark locations by analyzing local sub-images in a similar manner, i.e. by performing regression and classification simultaneously and combining the results. Evaluation was performed through localization of 8 anatomical landmarks in CCTA scans, 2 landmarks in olfactory MR scans, and 19 landmarks in cephalometric X-rays. We demonstrate that the method performs similarly to a second observer and is able to localize landmarks in a diverse set of medical images, differing in image modality, image dimensionality, and anatomical coverage.
AB - In this study, we propose a fast and accurate method to automatically localize anatomical landmarks in medical images. We employ a global-to-local localization approach using fully convolutional neural networks (FCNNs). First, a global FCNN localizes multiple landmarks through the analysis of image patches, performing regression and classification simultaneously. In regression, displacement vectors pointing from the center of image patches towards landmark locations are determined. In classification, presence of landmarks of interest in the patch is established. Global landmark locations are obtained by averaging the predicted displacement vectors, where the contribution of each displacement vector is weighted by the posterior classification probability of the patch that it is pointing from. Subsequently, for each landmark localized with global localization, local analysis is performed. Specialized FCNNs refine the global landmark locations by analyzing local sub-images in a similar manner, i.e. by performing regression and classification simultaneously and combining the results. Evaluation was performed through localization of 8 anatomical landmarks in CCTA scans, 2 landmarks in olfactory MR scans, and 19 landmarks in cephalometric X-rays. We demonstrate that the method performs similarly to a second observer and is able to localize landmarks in a diverse set of medical images, differing in image modality, image dimensionality, and anatomical coverage.
KW - Landmark localization
KW - cardiac CT
KW - cephalometric X-ray
KW - classification
KW - convolutional neural network
KW - deep learning
KW - olfactory MR
KW - regression
UR - http://www.scopus.com/inward/record.url?scp=85097004306&partnerID=8YFLogxK
U2 - 10.1109/TMI.2020.3009002
DO - 10.1109/TMI.2020.3009002
M3 - Article
C2 - 32746142
SN - 0278-0062
VL - 39
SP - 4011
EP - 4022
JO - IEEE transactions on medical imaging
JF - IEEE transactions on medical imaging
IS - 12
M1 - 9139480
ER -