TY - JOUR
T1 - Can 7T MPRAGE match MP2RAGE for gray-white matter contrast?
AU - Oliveira, Ícaro A.F.
AU - Roos, Thomas
AU - Dumoulin, Serge O.
AU - Siero, Jeroen C.W.
AU - van der Zwaag, Wietske
N1 - Funding Information:
This work was supported by the Netherlands Organization for Scientific Research (NWO) Vidi Grant (TTW VI.Vidi.198.016 to W.Z.), the Royal Netherlands Academy for Arts and Sciences (KNAW) research grant (2018, to S.O.D, W.Z. J.S.), an NWO Vici (016.Vici.185.050 to S.O.D.) and an Ammodo KNAW Award (S.O.D.). The Spinoza Center is a joint initiative of the University of Amsterdam, Academic Medical Center, VU University, VU University Medical Center, Netherlands Institute for Neuroscience and the Royal Netherlands Academy for Arts and Sciences. The data that support the findings of this study are available from the corresponding author, upon reasonable request.
Funding Information:
This work was supported by the Netherlands Organization for Scientific Research (NWO) Vidi Grant (TTW VI.Vidi.198.016 to W.Z.), the Royal Netherlands Academy for Arts and Sciences (KNAW) research grant (2018, to S.O.D, W.Z., J.S.), an NWO Vici (016.Vici.185.050 to S.O.D.) and an Ammodo KNAW Award (S.O.D.). The Spinoza Center is a joint initiative of the University of Amsterdam, Academic Medical Center, VU University, VU University Medical Center, Netherlands Institute for Neuroscience and the Royal Netherlands Academy for Arts and Sciences.
Publisher Copyright:
© 2021 The Authors
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.
PY - 2021/10/15
Y1 - 2021/10/15
N2 - Ultra-High Field (UHF) MRI provides a significant increase in Signal-to-Noise Ratio (SNR) and gains in contrast weighting in several functional and structural acquisitions. Unfortunately, an increase in field strength also induces non-uniformities in the transmit field (B1+) that can compromise image contrast non-uniformly. The MPRAGE is one of the most common T1 weighted (T1w) image acquisitions for structural imaging. It provides excellent contrast between gray and white matter and is widely used for brain segmentation. At 7T, the signal non-uniformities tend to complicate this and therefore, the self-bias-field corrected MP2RAGE is often used there. In both MPRAGE and MP2RAGE, more homogeneous image contrast can be achieved with adiabatic pulses, like the TR-FOCI inversion pulse, or special pulse design on parallel transmission systems, like Universal Pulses (UP). In the present study, we investigate different strategies to improve the bias-field for MPRAGE at 7T, comparing the contrast and GM/WM segmentability against MP2RAGE. The higher temporal efficiency of MPRAGE combined with the potential of the user-friendly UPs was the primary motivation for this MPRAGE-MP2RAGE comparison. We acquired MPRAGE data in six volunteers, adding a k-space shutter to reduce scan time, a kt-point UP approach for homogeneous signal excitation, and a TR-FOCI pulse for homogeneous inversion. Our results show remarkable signal contrast improvement throughout the brain, including regions of low B1+ such as the cerebellum. The improvements in the MPRAGE were largest following the introduction of the UPs. In addition to the CNR, both SNR and GM/WM segmentability were also assessed. Among the MPRAGEs, the combined strategy (UP + TR-FOCI) yielded highest SNR and showed highest spatial similarity between GM segments to the MP2RAGE. Interestingly, the distance between gray and white matter peaks in the intensity histograms did not increase, as better pulses and higher SNR especially benefitted the (cerebellar) gray matter. Overall, the gray-white matter contrast from MP2RAGE is higher, with higher CNR and higher intensity peak distances, even when scaled to scan time. Hence, the extra acquisition time for MP2RAGE is justified by the improved segmentability.
AB - Ultra-High Field (UHF) MRI provides a significant increase in Signal-to-Noise Ratio (SNR) and gains in contrast weighting in several functional and structural acquisitions. Unfortunately, an increase in field strength also induces non-uniformities in the transmit field (B1+) that can compromise image contrast non-uniformly. The MPRAGE is one of the most common T1 weighted (T1w) image acquisitions for structural imaging. It provides excellent contrast between gray and white matter and is widely used for brain segmentation. At 7T, the signal non-uniformities tend to complicate this and therefore, the self-bias-field corrected MP2RAGE is often used there. In both MPRAGE and MP2RAGE, more homogeneous image contrast can be achieved with adiabatic pulses, like the TR-FOCI inversion pulse, or special pulse design on parallel transmission systems, like Universal Pulses (UP). In the present study, we investigate different strategies to improve the bias-field for MPRAGE at 7T, comparing the contrast and GM/WM segmentability against MP2RAGE. The higher temporal efficiency of MPRAGE combined with the potential of the user-friendly UPs was the primary motivation for this MPRAGE-MP2RAGE comparison. We acquired MPRAGE data in six volunteers, adding a k-space shutter to reduce scan time, a kt-point UP approach for homogeneous signal excitation, and a TR-FOCI pulse for homogeneous inversion. Our results show remarkable signal contrast improvement throughout the brain, including regions of low B1+ such as the cerebellum. The improvements in the MPRAGE were largest following the introduction of the UPs. In addition to the CNR, both SNR and GM/WM segmentability were also assessed. Among the MPRAGEs, the combined strategy (UP + TR-FOCI) yielded highest SNR and showed highest spatial similarity between GM segments to the MP2RAGE. Interestingly, the distance between gray and white matter peaks in the intensity histograms did not increase, as better pulses and higher SNR especially benefitted the (cerebellar) gray matter. Overall, the gray-white matter contrast from MP2RAGE is higher, with higher CNR and higher intensity peak distances, even when scaled to scan time. Hence, the extra acquisition time for MP2RAGE is justified by the improved segmentability.
KW - Brain segmentation
KW - kt-points
KW - MP2RAGE
KW - MPRAGE
KW - parallel transmission
KW - T1-weighted images
KW - ultra-high field
KW - Universal pulse
KW - Data Interpretation, Statistical
KW - Humans
KW - Magnetic Resonance Imaging/methods
KW - Male
KW - Gray Matter/diagnostic imaging
KW - White Matter/diagnostic imaging
KW - Adult
KW - Female
KW - Image Interpretation, Computer-Assisted/methods
UR - http://www.scopus.com/inward/record.url?scp=85110355665&partnerID=8YFLogxK
U2 - 10.1016/j.neuroimage.2021.118384
DO - 10.1016/j.neuroimage.2021.118384
M3 - Article
C2 - 34265419
AN - SCOPUS:85110355665
SN - 1053-8119
VL - 240
JO - NeuroImage
JF - NeuroImage
M1 - 118384
ER -