TY - JOUR
T1 - An annotated dataset for event-based surveillance of antimicrobial resistance
AU - Arınık, Nejat
AU - Van Bortel, Wim
AU - Boudoua, Bahdja
AU - Busani, Luca
AU - Decoupes, Rémy
AU - Interdonato, Roberto
AU - Kafando, Rodrique
AU - van Kleef, Esther
AU - Roche, Mathieu
AU - Alam Syed, Mehtab
AU - Teisseire, Maguelonne
N1 - Publisher Copyright:
© 2023 The Authors
PY - 2023/2
Y1 - 2023/2
N2 - This paper presents an annotated dataset used in the MOOD Antimicrobial Resistance (AMR) hackathon, hosted in Montpellier, June 2022. The collected data concerns unstructured data from news items, scientific publications and national or international reports, collected from four event-based surveillance (EBS) Systems, i.e. ProMED, PADI-web, HealthMap and MedISys. Data was annotated by relevance for epidemic intelligence (EI) purposes with the help of AMR experts and an annotation guideline. Extracted data were intended to include relevant events on the emergence and spread of AMR such as reports on AMR trends, discovery of new drug-bug resistances, or new AMR genes in human, animal or environmental reservoirs. This dataset can be used to train or evaluate classification approaches to automatically identify written text on AMR events across the different reservoirs and sectors of One Health (i.e. human, animal, food, environmental sources, such as soil and waste water) in unstructured data (e.g. news, tweets) and classify these events by relevance for EI purposes.
AB - This paper presents an annotated dataset used in the MOOD Antimicrobial Resistance (AMR) hackathon, hosted in Montpellier, June 2022. The collected data concerns unstructured data from news items, scientific publications and national or international reports, collected from four event-based surveillance (EBS) Systems, i.e. ProMED, PADI-web, HealthMap and MedISys. Data was annotated by relevance for epidemic intelligence (EI) purposes with the help of AMR experts and an annotation guideline. Extracted data were intended to include relevant events on the emergence and spread of AMR such as reports on AMR trends, discovery of new drug-bug resistances, or new AMR genes in human, animal or environmental reservoirs. This dataset can be used to train or evaluate classification approaches to automatically identify written text on AMR events across the different reservoirs and sectors of One Health (i.e. human, animal, food, environmental sources, such as soil and waste water) in unstructured data (e.g. news, tweets) and classify these events by relevance for EI purposes.
KW - Annotation
KW - Antimicrobial resistance (AMR)
KW - Epidemiology
KW - Text mining
UR - http://www.scopus.com/inward/record.url?scp=85145971187&partnerID=8YFLogxK
U2 - 10.1016/j.dib.2022.108870
DO - 10.1016/j.dib.2022.108870
M3 - Article
AN - SCOPUS:85145971187
SN - 2352-3409
VL - 46
JO - Data in Brief
JF - Data in Brief
M1 - 108870
ER -