TY - JOUR
T1 - A deep learning-based method for improving reliability of multicenter diffusion kurtosis imaging with varied acquisition protocols
AU - Tong, Qiqi
AU - Gong, Ting
AU - He, Hongjian
AU - Wang, Zheng
AU - Yu, Wenwen
AU - Zhang, Jianjun
AU - Zhai, Lihao
AU - Cui, Hongsheng
AU - Meng, Xin
AU - Tax, Chantal W M
AU - Zhong, Jianhui
N1 - Funding Information:
The Dataset 2 used in this study was acquired at the UK National Facility for In Vivo MR Imaging of Human Tissue Microstructure located in CUBRIC, funded by the EPSRC [grant number EP/M029778/1 ] and The Wolfson Foundation. Acquisition and processing of the data were supported by a Rubicon grant from the NWO [grant number 680-50-1527 ], a Wellcome Trust Investigator Award [grant number 096646/Z/11/Z ), and a Wellcome Trust Strategic Award [grant number 104943/Z/14/Z ]. This database was initiated by the 2017 and 2018 MICCAI Computational Diffusion MRI committees (Chantal Tax, Francesco Grussu, Enrico Kaden, Lipeng Ning, Jelle Veraart, Elisenda Bonet-Carne, and Farshid Sepehrband) and CUBRIC, Cardiff University (Chantal Tax, Derek Jones, Umesh Rudrapatna, John Evans, Greg Parker, Slawomir Kusmia, Cyril Charron, and David Linden).
Funding Information:
This work was supported by the National Key R&D Program of China [grant number 2017YFC0909200 ], National Natural Science Foundation of China [grant numbers 81871428 , 91632109 ], Shanghai Key Laboratory of Psychotic Disorders [grant number 13dz2260500 ], Major Scientific Project of Zhejiang Lab [grant number 2018DG0ZX01 ], Fundamental Research Funds for the Central Universities [grant numbers 2019QNA5026 , 2019XZZX001-01-08 ], and Zhejiang University Education Foundation Global Partnership Fund .
Funding Information:
This work was supported by the National Key R&D Program of China [grant number 2017YFC0909200], National Natural Science Foundation of China [grant numbers 81871428, 91632109], Shanghai Key Laboratory of Psychotic Disorders [grant number 13dz2260500], Major Scientific Project of Zhejiang Lab [grant number 2018DG0ZX01], Fundamental Research Funds for the Central Universities [grant numbers 2019QNA5026, 2019XZZX001-01-08], and Zhejiang University Education Foundation Global Partnership Fund. We acknowledge the great supports from the following institutions in collecting the Dataset 1 in this study: The Third Affiliated Hospital of Qiqihar Medical University in Qiqihar, Zhejiang Hospital in Hangzhou, and Chinese Academy of Sciences in Shanghai. The Dataset 2 used in this study was acquired at the UK National Facility for In Vivo MR Imaging of Human Tissue Microstructure located in CUBRIC, funded by the EPSRC [grant number EP/M029778/1] and The Wolfson Foundation. Acquisition and processing of the data were supported by a Rubicon grant from the NWO [grant number 680-50-1527], a Wellcome Trust Investigator Award [grant number 096646/Z/11/Z), and a Wellcome Trust Strategic Award [grant number 104943/Z/14/Z]. This database was initiated by the 2017 and 2018 MICCAI Computational Diffusion MRI committees (Chantal Tax, Francesco Grussu, Enrico Kaden, Lipeng Ning, Jelle Veraart, Elisenda Bonet-Carne, and Farshid Sepehrband) and CUBRIC, Cardiff University (Chantal Tax, Derek Jones, Umesh Rudrapatna, John Evans, Greg Parker, Slawomir Kusmia, Cyril Charron, and David Linden).
Publisher Copyright:
© 2020 Elsevier Inc.
PY - 2020/11
Y1 - 2020/11
N2 - Multicenter magnetic resonance imaging is gaining more popularity in large-sample projects. Since both varying hardware and software across different centers cause unavoidable data heterogeneity across centers, its impact on reliability in study outcomes has also drawn much attention recently. One fundamental issue arises in how to derive model parameters reliably from image data of varying quality. This issue is even more challenging for advanced diffusion methods such as diffusion kurtosis imaging (DKI). Recently, deep learning-based methods have been demonstrated with their potential for robust and efficient computation of diffusion-derived measures. Inspired by these approaches, the current study specifically designed a framework based on a three-dimensional hierarchical convolutional neural network, to jointly reconstruct and harmonize DKI measures from multicenter acquisition to reformulate these to a state-of-the-art hardware using data from traveling subjects. The results from the harmonized data acquired with different protocols show that: 1) the inter-scanner variation of DKI measures within white matter was reduced by 51.5% in mean kurtosis, 65.9% in axial kurtosis, 53.7% in radial kurtosis, and 61.5% in kurtosis fractional anisotropy, respectively; 2) data reliability of each single scanner was enhanced and brought to the level of the reference scanner; and 3) the harmonization network was able to reconstruct reliable DKI values from high data variability. Overall the results demonstrate the feasibility of the proposed deep learning-based method for DKI harmonization and help to simplify the protocol setup procedure for multicenter scanners with different hardware and software configurations.
AB - Multicenter magnetic resonance imaging is gaining more popularity in large-sample projects. Since both varying hardware and software across different centers cause unavoidable data heterogeneity across centers, its impact on reliability in study outcomes has also drawn much attention recently. One fundamental issue arises in how to derive model parameters reliably from image data of varying quality. This issue is even more challenging for advanced diffusion methods such as diffusion kurtosis imaging (DKI). Recently, deep learning-based methods have been demonstrated with their potential for robust and efficient computation of diffusion-derived measures. Inspired by these approaches, the current study specifically designed a framework based on a three-dimensional hierarchical convolutional neural network, to jointly reconstruct and harmonize DKI measures from multicenter acquisition to reformulate these to a state-of-the-art hardware using data from traveling subjects. The results from the harmonized data acquired with different protocols show that: 1) the inter-scanner variation of DKI measures within white matter was reduced by 51.5% in mean kurtosis, 65.9% in axial kurtosis, 53.7% in radial kurtosis, and 61.5% in kurtosis fractional anisotropy, respectively; 2) data reliability of each single scanner was enhanced and brought to the level of the reference scanner; and 3) the harmonization network was able to reconstruct reliable DKI values from high data variability. Overall the results demonstrate the feasibility of the proposed deep learning-based method for DKI harmonization and help to simplify the protocol setup procedure for multicenter scanners with different hardware and software configurations.
KW - Deep learning
KW - Diffusion kurtosis imaging
KW - Diffusion magnetic resonance imaging
KW - Multicenter harmonization
UR - http://www.scopus.com/inward/record.url?scp=85089467602&partnerID=8YFLogxK
U2 - 10.1016/j.mri.2020.08.001
DO - 10.1016/j.mri.2020.08.001
M3 - Article
C2 - 32822818
SN - 0730-725X
VL - 73
SP - 31
EP - 44
JO - Magnetic Resonance Imaging
JF - Magnetic Resonance Imaging
ER -