Martin Bootsma

2024

THE EFFECT OF HOST POPULATION HETEROGENEITY ON EPIDEMIC OUTBREAKS

Bootsma, M. C. J., Chan, K. M. D., Diekmann, O. & Inaba, H., Mar 2024, In: Mathematics in Applied Sciences and Engineering. 5, 1, p. 1-35 35 p., e16718.

Research output: Contribution to journal › Article › Academic › peer-review

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2023

A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms

Van der Roest, B. R., Bootsma, M. C. J., Fischer, E. A. J., Klinkenberg, D. & Kretzschmar, M. E. E., 27 Nov 2023, In: PLoS Computational Biology. 19, 11, 21 p., e1010928.

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Genome-wide association reveals host-specific genomic traits in Escherichia coli

Tiwari, S. K., van der Putten, B. C. L., Fuchs, T. M., Vinh, T. N., Bootsma, M., Oldenkamp, R., La Ragione, R., Matamoros, S., Hoa, N. T., Berens, C., Leng, J., Álvarez, J., Ferrandis-Vila, M., Ritchie, J. M., Fruth, A., Schwarz, S., Domínguez, L., Ugarte-Ruiz, M., Bethe, A. & Huber, C. & 9 others, Johanns, V., Stamm, I., Wieler, L. H., Ewers, C., Fivian-Hughes, A., Schmidt, H., Menge, C., Semmler, T. & Schultsz, C., Dec 2023, In: BMC Biology. 21, 1, 14 p., 76.

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New methodology to assess the excess burden of antibiotic resistance using country-specific parameters: A case study regarding E. coli urinary tract infections

Godijk, N. G., McDonald, S. A., Altorf-Van der Kuil, W., Schoffelen, A. F., Franz, E. & Bootsma, M. C. J., 18 Dec 2023, In: BMJ Open. 13, 12, 13 p., e064335.

Research output: Contribution to journal › Article › Academic › peer-review

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Separable mixing: The general formulation and a particular example focusing on mask efficiency

Bootsma, M. C. J., Chan, K. M. D., Diekmann, O. & Inaba, H., 2023, In: Mathematical Biosciences and Engineering. 20, 10, p. 17661-17671 11 p.

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2022

Does plasmid-based beta-lactam resistance increase E. coli infections: Modelling addition and replacement mechanisms

Godijk, N. G., Bootsma, M. C. J., van Werkhoven, H. C., Schweitzer, V. A., de Greeff, S. C., Schoffelen, A. F. & Bonten, M. J. M., Mar 2022, In: PLoS Computational Biology. 18, 3, e1009875.

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Duration of rectal colonization with extended-spectrum beta-lactamase-producing Escherichia coli: results of an open, dynamic cohort study in Dutch nursing home residents (2013-2019)

Weterings, V., van den Bijllaardt, W., Bootsma, M., Hendriks, Y., Kilsdonk, L., Mulders, A. & Kluytmans, J., 15 Jul 2022, In: Antimicrobial Resistance and Infection Control. 11, 98.

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Effectiviteit van verschillende toepassingen van het coronatoegangsbewijs

Bootsma, M., Kretzschmar, M., Kolen, B., Mouter, N. & de Vries, M., 17 Jan 2022, 136 p.

Research output: Book/Report › Report › Professional

Open Access

Routes of transmission of VIM-positive Pseudomonas aeruginosa in the adult intensive care unit-analysis of 9 years of surveillance at a university hospital using a mathematical model

Pham, T. M., Büchler, A. C., Voor in ‘t holt, A. F., Severin, J. A., Bootsma, M. C. J., Gommers, D., Kretzschmar, M. E. & Vos, M. C., 4 Apr 2022, In: Antimicrobial Resistance and Infection Control. 11, 1, 55.

Research output: Contribution to journal › Article › Academic › peer-review

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The importance of sustained compliance with physical distancing during COVID-19 vaccination rollout

Teslya, A., Rozhnova, G., Pham, T. M., van Wees, D. A., Nunner, H., Godijk, N. G., Bootsma, M. & Kretzschmar, M. E., 19 Nov 2022, In: Communications medicine. 2, 1, 146.

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Transmission routes of antibiotic resistant bacteria: a systematic review

Godijk, N. G., Bootsma, M. C. J. & Bonten, M. J. M., 20 May 2022, In: BMC Infectious Diseases. 22, p. 1-15 482.

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2021

Derde rapport modellering SARS-CoV-2 infecties in het voortgezet onderwijs

Translated title of the contribution: Modelling SARS-CoV-2 infections in secondary educationPham, T. M., Westerhof, I., Rozhnova, G., Bootsma, M., Kretzschmar, M. & Bruijning-Verhagen, P., 7 Sept 2021, UMC Utrecht. 32 p.

Research output: Book/Report › Report › Academic

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Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers

7 Jun 2021, In: Genome Medicine. 13, 1, 79.

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1 Citation (Scopus)

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Effectiveness of contact tracing apps for SARS-CoV-2: a rapid systematic review

Jenniskens, K., Bootsma, M. C. J., Damen, J. A. A. G., Oerbekke, M. S., Vernooij, R. W. M., Spijker, R., Moons, K. G. M., Kretzschmar, M. E. E. & Hooft, L., 12 Jul 2021, In: BMJ Open. 11, 7, p. 1-14 22 p., e050519.

Research output: Contribution to journal › Review article › peer-review

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Impact van preventieve maatregelen op de overdracht van SARS-CoV-2 in het voortgezet onderwijs - een model-studie

Translated title of the contribution: Impact of preventive measures on SARS-CoV-2 transmission in secondary education - a modelling studyPham, T. M., Rozhnova, G., Westerhof, I., Kretzschmar, M., Bootsma, M. & Bruijning-Verhagen, P., 10 Jun 2021

Research output: Book/Report › Report › Academic

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Interventions to control nosocomial transmission of SARS-CoV-2: a modelling study

Pham, T. M., Tahir, H., van de Wijgert, J. H. H. M., Van der Roest, B. R., Ellerbroek, P., Bonten, M. J. M., Bootsma, M. C. J. & Kretzschmar, M. E., Dec 2021, In: BMC Medicine. 19, 1, p. 1-16 211.

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Model-based evaluation of school- and non-school-related measures to control the COVID-19 pandemic

Rozhnova, G., van Dorp, C. H., Bruijning-Verhagen, P., Bootsma, M. C. J., van de Wijgert, J. H. H. M., Bonten, M. J. M. & Kretzschmar, M. E., 12 Mar 2021, In: Nature Communications. 12, 1, p. 1-11 1614.

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Modelling the impact of preventive measures on the transmission of SARS-CoV-2 in secondary schools in the Netherlands

Pham, T. M., Rozhnova, G., Westerhof, I., Bootsma, M., Kretzschmar, M. & Bruijning-Verhagen, P., 13 Aug 2021, UMC Utrecht.

Research output: Book/Report › Report › Academic

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Modelling the impact of preventive measures on the transmission of SARS-CoV-2 in secondary schools in the Netherlands

Pham, T. M., Rozhnova, G., Westerhof, I., Bonten, M., Bootsma, M., Kretzschmar, M. & Bruijning-Verhagen, P., 1 Jul 2021

Research output: Non-textual form › Software › Other research output

Open Access

The discrete-time Kermack-McKendrick model: A versatile and computationally attractive framework for modeling epidemics

Diekmann, O., Othmer, H. G., Planqué, R. & Bootsma, M. C. J., 28 Sept 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 39, e2106332118.

Research output: Contribution to journal › Article › Academic › peer-review

Tweede rapport modellering SARS-CoV-2 infecties in het voortgezet onderwijs

Translated title of the contribution: Modelling SARS-CoV-2 infections in secondary educationPham, T. M., Westerhof, I., Rozhnova, G., Bootsma, M., Kretzschmar, M. & Bruijning-Verhagen, P., 7 Jul 2021, UMC Utrecht. 28 p.

Research output: Book/Report › Report › Academic

Open Access

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2020

Author Correction: Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction (vol 7, 15364, 2017): Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction (Scientific Reports, (2017), 7, 1, (15364), 10.1038/s41598-017-15539-7)

Matamoros, S., van Hattem, J. M., Arcilla, M. S., Willemse, N., Melles, D. C., Penders, J., Vinh, T. N., Thi Hoa, N., Bootsma, M. C. J., Genderen, P. J. V., Goorhuis, A., Grobusch, M., Molhoek, N., Oude Lashof, A. M. L., Stobberingh, E. E., Verbrugh, H. A., de Jong, M. D. & Schultsz, C., 1 Dec 2020, In: Scientific Reports. 10, 1, p. 1-1 2963.

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

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Digitale middelen in de strijd tegen covid-19: Is een tweede golf te voorkomen?

Translated title of the contribution: Digital tools for the fight against COVID-19: Can a second wave be avoided?Kretzschmar, M. E. E., Bruijning-Verhagen, P. C. J. L., Bootsma, M. C. J., Bonten, M. J. M. & van de Wijgert, J. H. H. M., 2020, In: Nederlands Tijdschrift voor Geneeskunde. 164, 36, D5280.

Research output: Contribution to journal › Review article › peer-review

Dynamics of intestinal carriage of Extended-spectrum Beta-lactamase producing Enterobacteriaceae in the Dutch general population (2014-2016)

van den Bunt, G., Fluit, A. C., Bootsma, M. C. J., Duijkeren, E. V., Scharringa, J., Pelt, W. V. & Bonten, M. J. M., 15 Oct 2020, In: Clinical Infectious Diseases. 71, 8, p. 1847-1855 9 p.

Research output: Contribution to journal › Article › Academic › peer-review

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gplas: a comprehensive tool for plasmid analysis using short-read graphs

Arredondo-Alonso, S., Bootsma, M., Hein, Y., Rogers, M. R. C., Corander, J., Willems, R. J. L. & Schürch, A. C., 15 Jun 2020, In: Bioinformatics (Oxford, England). 36, 12, p. 3874-3876 3 p.

Research output: Contribution to journal › Article › Academic › peer-review

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Impact of delays on effectiveness of contact tracing strategies for COVID-19: a modelling study

Kretzschmar, M. E., Rozhnova, G., Bootsma, M. C. J., van Boven, M., van de Wijgert, J. H. H. M. & Bonten, M. J. M., Aug 2020, In: The Lancet Public Health. 5, 8, p. e452-e459

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Impact of self-imposed prevention measures and short-term government-imposed social distancing on mitigating and delaying a COVID-19 epidemic: a modelling study

Teslya, A., Pham, T. M., Godijk, N. G., Kretzschmar, M. E., Bootsma, M. C. J. & Rozhnova, G., 1 Jul 2020, In: PLoS Medicine. 17, 7, p. 1-21 e1003166.

Research output: Contribution to journal › Article › Academic › peer-review

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1 Citation (Scopus)

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Prevalence and risk factors for carriage of ESBL-producing Enterobacteriaceae in a population of Dutch travellers: A cross-sectional study

Arcilla, M. S., Van Hattem, J. M., Bootsma, M. C. J., van Genderen, P. J. J., Goorhuis, A., Grobusch, M. P., Klaassen, C. H. W., Oude Lashof, A. M., Schultsz, C., Stobberingh, E. E., de Jong, M. D., Penders, J., Verbrugh, H. A. & Melles, D. C., Jan 2020, In: Travel Medicine and Infectious Disease. 33, p. 1-7 7 p., 101547.

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Voorspellen van het aantal opnames van patiënten met COVID-19

Translated title of the contribution: Predicting the number of admissions of patients with COVID-19van der Roest, B., Godijk, N. G., Kretzschmar, M., Rozhnova, G. & Bootsma, M., Jun 2020, In: Nederlandse Vereniging voor Medische Microbiologie. 28, 2, p. 68-72 5 p.

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2019

Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study

Aug 2019, In: The Lancet. Planetary health. 3, 8, p. e357-e369

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Carriage of Blastocystis spp. in travellers - A prospective longitudinal study

van Hattem, J. M., Arcilla, M. S., Schultsz, C., Bootsma, M. C., Verhaar, N., Rebers, S. P., Goorhuis, A., Grobusch, M. P., Penders, J., de Jong, M. D., van Gool, T., Bart, A., van Genderen, P. J., Melles, D. C., Molhoek, N., Oude Lashof, A. M., Stobberingh, E. E., Verbrugh, H. A., Jan 2019, In: Travel Medicine and Infectious Disease. 27, p. 87-91 5 p.

Research output: Contribution to journal › Article › Academic › peer-review

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How fluoroquinolones poison the neighbourhood

van Werkhoven, C. H., Bootsma, M. & Bonten, M., Apr 2019, In: The Lancet Infectious Diseases. 19, 4, p. 347-348 2 p.

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

Tracking Pseudomonas aeruginosa transmissions due to environmental contamination after discharge in ICUs using mathematical models

28 Aug 2019, In: PLoS Computational Biology. 15, 8, e1006697.

Research output: Contribution to journal › Article › Academic › peer-review

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2018

A stochastic simulation model to study respondent-driven recruitment

Stein, M. L., Buskens, V., van der Heijden, P. G. M., Van Steenbergen, J. E., Wong, A., Bootsma, M. C. J. & Kretzschmar, M. E. E., 1 Nov 2018, In: PLoS ONE. 13, 11, e0207507.

Research output: Contribution to journal › Article › Academic › peer-review

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Correction: Latent tuberculosis infection in foreign-born communities: Import vs. transmission in The Netherlands derived through mathematical modelling

Korthals Altes, H., Kloet, S., Cobelens, F. & Bootsma, M., 2018, In: PLoS ONE. 13, 5, e0198376.

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

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High prevalence of intra-familial co-colonization by extended-spectrum cephalosporin resistant Enterobacteriaceae in preschool children and their parents in Dutch households

Liakopoulos, A., van den Bunt, G., Geurts, Y., Bootsma, M. C. J., Toleman, M., Ceccarelli, D., van Pelt, W. & Mevius, D. J., 21 Feb 2018, In: Frontiers in Microbiology. 9, FEB, 293.

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Latent tuberculosis infection in foreign-born communities: Import vs. transmission in The Netherlands derived through mathematical modelling

Korthals Altes, H., Kloet, S., Cobelens, F. & Bootsma, M., 14 Feb 2018, In: PLoS ONE [E]. 13, 2, p. e0192282 e0192282.

Research output: Contribution to journal › Article › Academic › peer-review

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Quantifying Hospital-Acquired Carriage of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae Among Patients in Dutch Hospitals

Kluytmans-Van Den Bergh, M. F. Q., Van Mens, S. P., Haverkate, M. R., Bootsma, M. C. J., Kluytmans, J. A. J. W., Bonten, M. J. M., 1 Jan 2018, In: Infection control and hospital epidemiology. 39, 1, p. 32-39 8 p.

Research output: Contribution to journal › Article › Academic › peer-review

9 Citations (Scopus)

The Transmissibility of Antibiotic-Resistant Enterobacteriaceae in Intensive Care Units

Gurieva, T., Dautzenberg, M. J. D., Gniadkowski, M., Derde, L. P. G., Bonten, M. J. M. & Bootsma, M. C. J., 15 Feb 2018, In: Clinical Infectious Diseases. 66, 4, p. 489-493 5 p.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

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2017

Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction

Matamoros, S., Van Hattem, J. M., Arcilla, M. S., Willemse, N., Melles, D. C., Penders, J., Vinh, T. N., Thi Hoa, N., Bootsma, M. C. J., Van Genderen, P. J., Goorhuis, A., Grobusch, M., Molhoek, N., Oude Lashof, A. M. L., Stobberingh, E. E., Verbrugh, H. A., De Jong, M. D. & Schultsz, C., 1 Dec 2017, In: Scientific Reports. 7, 1, 15364.

Research output: Contribution to journal › Article › Academic › peer-review

Open Access

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2 Citations (Scopus)

1 Downloads (Pure)

Import and spread of extended-spectrum β-lactamase-producing Enterobacteriaceae by international travellers (COMBAT study): a prospective, multicentre cohort study

Arcilla, M. S., van Hattem, J. M., Haverkate, M. R., Bootsma, M. C. J., van Genderen, P. J. J., Goorhuis, A., Grobusch, M. P., Lashof, A. M. O., Molhoek, N., Schultsz, C., Stobberingh, E. E., Verbrugh, H. A., de Jong, M. D., Melles, D. C. & Penders, J., 1 Jan 2017, In: The Lancet Infectious Diseases. 17, 1, p. 78-85 8 p.

Research output: Contribution to journal › Article › Academic › peer-review

Quantifying within-household transmission of ESBL-producing bacteria

Haverkate, M. R., Platteel, T. N., Fluit, A. C., Cohen Stuart, J. W., Leverstein-van Hall, M. A., Thijsen, S. F. T., Scharringa, J., Kloosterman, F. R. C., Bonten, M. J. M. & Bootsma, M. C. J., Jan 2017, In: Clinical Microbiology and Infection. 23, 1, p. 46.e1–46.e7

Research output: Contribution to journal › Article › Academic › peer-review

Travel-related acquisition of diarrhoeagenic bacteria, enteral viruses and parasites in a prospective cohort of 98 Dutch travellers

van Hattem, J. M., Arcilla, M. S., Grobusch, M. P., Bart, A., Bootsma, M. C., van Genderen, P. J. J., van Gool, T., Goorhuis, A., van Hellemond, J. J., Molenkamp, R., Molhoek, N., Oude Lashof, A. M. L., Stobberingh, E. E., de Wever, B., Verbrugh, H. A., Melles, D. C., Penders, J., Schultsz, C. & de Jong, M. D., Sept 2017, In: Travel Medicine and Infectious Disease. 19, p. 33-36 4 p.

Research output: Contribution to journal › Article › Academic › peer-review

2016

Duration of Colonization With Klebsiella pneumoniae Carbapenemase-Producing Bacteria at Long-Term Acute Care Hospitals in Chicago, Illinois

Haverkate, M. R., Weiner, S., Lolans, K., Moore, N. M., Weinstein, R. A., Bonten, M. J. M., Hayden, M. K. & Bootsma, M. C. J., 2016, In: Open forum infectious diseases. 3, 4, p. ofw178

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Epidemic potential of Escherichia coli ST131 and Klebsiella pneumoniae ST258: A systematic review and meta-analysis

Dautzenberg, M. J. D., Haverkate, M. R., Bonten, M. J. M. & Bootsma, M. C. J., 2016, In: BMJ open [E]. 6, 3, e009971.

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Prevention of Surgical Site Infections: Decontamination With Mupirocin Based on Preoperative Screening for Staphylococcus aureus Carriers or Universal Decontamination?

Hetem, D. J., Bootsma, M. C. J. & Bonten, M. J. M., Mar 2016, In: Clinical Infectious Diseases. 62, 5, p. 631-636

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Prolonged carriage and potential onward transmission of carbapenemase-producing Enterobacteriaceae in Dutch travelers

Van Hattem, J. M., Arcilla, M. S., Bootsma, M. C. J., Van Genderen, P. J., Goorhuis, A., Grobusch, M. P., Molhoek, N., Oude Lashof, A. M. L., Schultsz, C., Stobberingh, E. E., Verbrugh, H. A., De Jong, M. D., Melles, D. C. & Penders, J., 1 Jul 2016, In: Future microbiology. 11, 7, p. 857-864 8 p.

Research output: Contribution to journal › Article › Academic › peer-review

3 Citations (Scopus)

Prolonged colonisation with Escherichia coli O25: ST131 versus other extended-spectrum beta-lactamase-producing E. coli in a long-term care facility with high endemic level of rectal colonisation, the Netherlands, 2013 to 2014

Overdevest, I., Haverkate, M., Veenemans, J., Hendriks, Y., Verhulst, C., Mulders, A., Couprie, W., Bootsma, M., Johnson, J. & Kluytmans, J., 20 Oct 2016, In: Eurosurveillance. 21, 42, 3.

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2 Citations (Scopus)

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Reply to Deeny et al

Hetem, D. J., Bootsma, M. C. J. & Bonten, M. J. M., 1 May 2016, In: Clinical Infectious Diseases. 62, 9, p. 1194-1195 2 p.

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

Reply to Leenders

Hetem, D. J., Bootsma, M. C. J. & Bonten, M. J. M., 1 Jun 2016, In: Clinical Infectious Diseases. 62, 11, p. 1470

Research output: Contribution to journal › Comment/Letter to the editor › Academic › peer-review

Martin Bootsma

Research output

Search results