Department of Pathology

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  • 2024

    Preprocessing Pathology Reports for Vision-Language Model Development

    Lucassen, R., van de Luijtgaarden, T., Moonemans, S., Blokx, W. & Veta, M., 6 Oct 2024, Proceedings of the MICCAI Workshop on Computational Pathology. p. 61-71 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

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  • Tissue Cross-Section and Pen Marking Segmentation in Whole Slide Images

    Lucassen, R., Blokx, W. & Veta, M., 3 Apr 2024, Proceedings Volume 12933, Medical Imaging 2024: Digital and Computational Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). 129330B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12933).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2023

    Abstract: the MIDOG Challenge 2021 Mitosis Domain Generalization in Histopathology Images

    Aubreville, M., Stathonikos, N., Bertram, C. A., Klopfleisch, R., ter Hoeve, N., Ciompi, F., Wilm, F., Marzahl, C., Donovan, T. A., Maier, A., Veta, M. & Breininger, K., 2023, Bildverarbeitung für die Medizin 2023 Proceedings, German Workshop on Medical Image Computing, Braunschweig. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). p. 115 1 p. (Informatik aktuell).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • Mind the Gap: Scanner-Induced Domain Shifts Pose Challenges for Representation Learning in Histopathology

    Wilm, F., Fragoso, M., Bertram, C. A., Stathonikos, N., Ottl, M., Qiu, J., Klopfleisch, R., Maier, A., Aubreville, M. & Breininger, K., 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE Computer Society Press, (Proceedings - International Symposium on Biomedical Imaging; vol. 2023-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • Multi-scanner Canine Cutaneous Squamous Cell Carcinoma Histopathology Dataset

    Wilm, F., Fragoso, M., Bertram, C. A., Stathonikos, N., Öttl, M., Qiu, J., Klopfleisch, R., Maier, A., Breininger, K. & Aubreville, M., 2023, Bildverarbeitung für die Medizin 2023 Proceedings, German Workshop on Medical Image Computing, Braunschweig. Deserno, T. M., Handels, H., Maier, A., Maier-Hein, K., Palm, C. & Tolxdorff, T. (eds.). Springer Science and Business Media Deutschland GmbH, p. 206-211 6 p. (Informatik aktuell).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2020

    Segmentation and Classification of Melanoma and Nevus in Whole Slide Images

    Van Zon, M., Stathonikos, N., Blokx, W. A. M., Komina, S., Maas, S. L. N., Pluim, J. P. W., Van Diest, P. J. & Veta, M., Apr 2020, ISBI 2020 - 2020 IEEE International Symposium on Biomedical Imaging. IEEE Computer Society, p. 263-266 4 p. 9098487. (Proceedings - International Symposium on Biomedical Imaging; vol. 2020-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2019

    Detection of acini in histopathology slides: Towards automated prediction of breast cancer risk

    Wetstein, S. C., Onken, A. M., Baker, G. M., Pyle, M. E., Pluim, J. P. W., Tamimi, R. M., Heng, Y. J. & Veta, M., 1 Jan 2019, Medical Imaging 2019: Digital Pathology. Tomaszewski, J. E. & Ward, A. D. (eds.). SPIE, 109560Q. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10956).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2017

    Fluorescently labeled bevacizumab in human breast cancer: Defining the classification threshold

    Koch, M., de Jong, J. S., Glatz, J., Symvoulidis, P., Lamberts, L. E., Adams, A. L. L., Kranendonk, M. E. G., Terwisscha van Scheltinga, A. G. T., Aichler, M., Jansen, L., de Vries, J., Lub-de Hooge, M. N., Schröder, C. P., Jorritsma-Smit, A., Linssen, M. D., de Boer, E., van der Vegt, B., Nagengast, W. B., Elias, S. G. & Oliveira, S. & 9 others, Witkamp, A. J., Mali, W. P. T. M., Van der Wall, E., Garcia-Allende, B. P., van Diest, P. J., de Vries, E. G. E., Walch, A., van Dam, G. M. & Ntziachristos, V., 2017, European Conference on Biomedical Optics, ECBO 2017. OSA - The Optical Society, Vol. Part F61-ECBO 2017. 104110F

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2016

    Cutting out the middleman: Measuring nuclear area in histopathology slides without segmentation

    Veta, M., Van Diest, P. J. & Pluim, J. P. W., 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016 - 19th International Conference, Proceedings: 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings. Ourselin, S., Joskowicz, L., Unal, G. & Wells, W. (eds.). Springer-Verlag, Vol. II. p. 632-639 8 p. (Lecture Notes in Computer Science; vol. 9901 )(Lecture Notes in Artificial Intelligence)(Lecture Notes in Bioinformatics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2013

    Detecting mitotic figures in breast cancer histopathology images

    Veta, M., Van Diest, P. J. & Pluim, J. P. W., 10 Jun 2013, Medical Imaging 2013: Digital Pathology. Vol. 8676. 867607

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    19 Citations (Scopus)
  • 2011

    Marker-controlled watershed segmentation of nuclei in H&E stained breast cancer biopsy images

    Veta, M., Huisman, A., Viergever, M. A., Van Diest, P. J. & Pluim, J. P. W., 2 Nov 2011, 2011 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'11. p. 618-621 4 p. 5872483

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    25 Citations (Scopus)
  • 2010

    Design and evaluation of a semantic approach for the homogeneous identification of events in eight patient databases: A contribution to the European EU-ADR project

    Avillach, P., Joubert, M., Thiessard, F., Trifirò, G., Dufour, J. C., Pariente, A., Mougin, F., Polimeni, G., Catania, M. A., Giaquinto, C., Mazzaglia, G., Fornari, C., Herings, R., Gini, R., Hippisley-Cox, J., Molokhia, M., Pedersen, L., Fourrier-Réglat, A., Sturkenboom, M. & Fieschi, M., 1 Jan 2010, Medinfo 2010 - Proceedings of the 13th World Congress on Medical Informatics. PART 1 ed. IOS Press, Vol. 160. p. 1085-1089 5 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    11 Citations (Scopus)
  • 2009

    A semantic approach for the homogeneous identification of events in eight patient databases: A contribution to the European eu-ADR project

    Avillach, P., Mougin, F., Joubert, M., Thiessard, F., Pariente, A., Dufour, J. C., Trifirò, G., Polimeni, G., Catania, M. A., Giaquinto, C., Mazzaglia, G., Baio, G., Herings, R., Gini, R., Hippisley-Cox, J., Molokhia, M., Pedersen, L., Fourrier-Réglat, A., Sturkenboom, M. & Fieschi, M., 1 Jan 2009, Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009: The 22nd International Congress of the European Federation for Medical Informatics. IOS Press, p. 190-194 5 p. (Studies in Health Technology and Informatics; vol. 150).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    21 Citations (Scopus)

  • Bladder cancer diagnosis during cystoscopy using Raman spectroscopy.

    Translated title of the contribution: Bladder cancer diagnosis during cystoscopy using Raman spectroscopy.Grimbergen, M. C. M., van Swol, C. F. P., Draga, R. O. P., van Diest, P. J., Verdaasdonk, R. M., Stone, N. & Bosch, J. L. H. R., 2009, Photonic Therapeutics and Diagnostics V. p. 716114-1-716114-6 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic

  • Diagnostic approach to congenital osteochondrodysplasias at autopsy.

    Translated title of the contribution: Diagnostic approach to congenital osteochondrodysplasias at autopsy.Nikkels, P. G. J., 2009, Diagnostic histopathology. Cross, S. S. (ed.). Elsevier, p. 413-424 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • Study of false positives in 5-ALA induced photodynamic diagnosis of bladder carcinoma.

    Translated title of the contribution: Study of false positives in 5-ALA induced photodynamic diagnosis of bladder carcinoma.Draga, R. O. P., Grimbergen, M. C. M., Kok, E. T., Jonges, G. N. & Bosch, J. L. H. R., 2009, Photonic Therapeutics and Diagnostics V. p. 71611Q-1-71611Q-11 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic

  • 2008

    The evaluation of a population based diffusion tensor image atlas using a ground truth method

    Van Hecke, W., Leemans, A., D'Agostino, E., De Backer, S., Vandervliet, E., Parizel, P. M. & Sijbers, J., 19 May 2008, Medical Imaging 2008: Image Processing. 69140B. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6914).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2006

    The occurrence of SDHB gene mutations in pheochromocytoma

    Van Nederveen, F. H., Dinjens, W. N. M., Korpershoek, E. & De Krijger, R. R., 1 Jan 2006, Pheochromocytoma: First International Symposium. Blackwell Publishing Inc./Futura Division, p. 177-182 6 p. (Annals of the New York Academy of Sciences; vol. 1073).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    14 Citations (Scopus)
  • 2005

    A Variety of HLA Phenotypes in Head and Neck Squamous Cell Carcinoma Patients Indentified with the Workshop antibodies as defined in the HLA and Cancer Component

    Translated title of the contribution: A Variety of HLA Phenotypes in Head and Neck Squamous Cell Carcinoma Patients Indentified with the Workshop antibodies as defined in the HLA and Cancer ComponentKoene, G. J. P. A., van der Ven, K. J. W., Verdaasdonk, M. A. M., Slootweg, P. J., de Weger, R. A. & Tilanus, M. G. J., 2005, Proceedings of the 13th International Histocompability Workshop and Congress.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

  • The Value of loss of heterozygosity of short tandem repeat markers to define expression variants of the β2-microglobulin gene

    Translated title of the contribution: The Value of loss of heterozygosity of short tandem repeat markers to define expression variants of the β2-microglobulin geneKoene, G. J. P. A., Coenen, S., Verdaasdonk, M. A. M., de Weger, R. A., Slootweg, P. J. & Tilanus, M. G. J., 2005, Proceedings of the 13th International Histocompability Workshop and Congress.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

  • 2004

    Sequence-Based Typing for HLA-DPA1 Strategy for ABI Sequencing Equipment

    Translated title of the contribution: Sequence-Based Typing for HLA-DPA1 Strategy for ABI Sequencing EquipmentRozemuller, E. H., van der Zwan, A. & Tilanus, M. G. J., 2004, Proceedings of the Sequence Based Typing 13th IHWG and recommended protocols.. dr. Tilanus, M. G. J. (ed.). Seattle: IHWG

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

  • Sequence-Based Typing for HLA-DPB1 Strategy for ABI Equipment

    Translated title of the contribution: Sequence-Based Typing for HLA-DPB1 Strategy for ABI Equipmentvan der Zwan, A., Rozemuller, E. H. & Tilanus, M. G. J., 2004, Proceedings of the Sequence Based Typing 13th IHWG and recommended protocols.. dr. Tilanus, M. G. J. (ed.). Seattle: IHWG

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

  • Sequence-Based Typing for HLA-DQB1 Strategy for ABI Sequence Equipment

    Translated title of the contribution: Sequence-Based Typing for HLA-DQB1 Strategy for ABI Sequence Equipmentvan der Zwan, A., Griffith, B., Rozemuller, E. H., Williams, T. & Tilanus, M. G. J., 2004, Proceedings of the Sequence Based Typing 13th IHWG and recommended protocols.. dr. Tilanus, M. G. J. (ed.). Seattle: IHWG

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Professional

  • Sequencing-Based-Typing, Genes and primer locations of the recommended protocols

    Translated title of the contribution: Sequencing-Based-Typing, Genes and primer locations of the recommended protocolsRozemuller, E. H., 2004, Proceedings of the Sequence Based Typing 13th IHWG and recommended protocols.. Seattle: Editor M.G.J. Tilanus

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic

  • 2001

    Photodynamic diagnosis (PDD) of bladder cancer with intravesical 5-aminolevulinic acid induced fluorescence

    Translated title of the contribution: Photodynamic diagnosis (PDD) of bladder cancer with intravesical 5-aminolevulinic acid induced fluorescenceGrimbergen, M. C. M., Jonges, G. N., Lock, M. T. W. T., van Swol, C. F. P., Boon, T. A. & van Moorselaar, R. J. A., 2001, SPIE Proceedings. p. 338-342 5 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2000

    Polyarthrosis in a Boa (Boa constrictor)

    Translated title of the contribution: Polyarthrosis in a Boa (Boa constrictor)Zwart, P., Mathes, K. & Slootweg, P. J., 18 Nov 2000, Proceedings of the British Veterinary Zoological Society autumn meeting. p. 38-40 3 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic

  • 1994

    Cancer nurses as sexual health care givers: the difficulties and possibilities

    Translated title of the contribution: Cancer nurses as sexual health care givers: the difficulties and possibilitiesGamel, C. J., Hengeveld, M. W., van den Tweel, J. G. & Davis, B., 1994, Proceedings International Oncology Nursing Society. Vancouver

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 1993

    Binding of HIV-1 to human follicular dendritic cells

    Joling, P., Bakker, L. J., Van Wichen, D. F., De Graaf, L., Meerloo, T., Visser, M. R., Van Strijp, J. A. G., Goudsmit, J., Verhoef, J. & Schuurman, H. J., 1 Jan 1993, Advances in Experimental Medicine and Biology. Vol. 329. p. 455-460 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    3 Citations (Scopus)