CMM Support

Research output

Research output per year 1989 1997 1998 1999 2000 2001 2002 2003 2004 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2025

• 2121 Article
• 170 Doctoral thesis 1 (Research UU / Graduation UU)
• 62 Review article
• 43 Chapter
• 163 More
  • 39 Doctoral thesis 2 (Research NOT UU / Graduation UU)
  • 30 Meeting Abstract
  • 22 Comment/Letter to the editor
  • 19 Poster
  • 13 Abstract
  • 9 Letter
  • 7 Paper
  • 5 Editorial
  • 4 Book
  • 4 Short survey
  • 3 Web publication/site
  • 2 Literature review
  • 1 Report
  • 1 Inaugural speech
  • 1 Foreword/postscript
  • 1 Other contribution
  • 1 Patent
  • 1 Doctoral thesis 3 (Research UU / Graduation NOT UU)

Research output per year

Research output per year

Search results

• 2023

  Functional characterization of endo-lysosomal compartments by correlative live-cell and volume electron microscopy

  Liv, N., Fermie, J., ten Brink, C. B. M., de Heus, C. & Klumperman, J., Jan 2023, Volume Electron Microscopy. Narayan, K., Collinson, L. & Verkade, P. (eds.). Academic Press Inc., p. 301-326 (Methods in Cell Biology; vol. 177).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Electron Microscopy 100%
  • Enzyme Activity 33%
  • Endosome 33%
  • Quantitative Technique 16%
  • Lysosome 16%
• 2020

  Primary Intestinal Epithelial Organoid Culture

  Mizutani, T. & Clevers, H., 2020, Intestinal Stem Cells: Methods and Protocols. Springer, p. 185-200 16 p. (Methods in molecular biology (Clifton, N.J.); vol. 2171).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Organoid 100%
  • Stem Cell 100%
  • Intestine 66%
  • Intestinal Stem Cell 33%
  • Gene Function 33%
• 2018

  Live imaging of cell division in 3D stem-cell organoid cultures

  Bolhaqueiro, A. C. F., van Jaarsveld, R. H., Ponsioen, B., Overmeer, R. M., Snippert, H. J. & Kops, G. J. P. L., 1 Jan 2018, Methods in Cell Biology. Academic Press Inc., Vol. 145. p. 91-106 16 p. (Methods in Cell Biology; vol. 145).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Organoid 100%
  • Stem Cell 100%
  • Cell Division 100%
  • Cell Function 50%
  • Adult Stem Cell 50%
• 2017

  Intestinal Epithelial Lgr5⁺ Stem Cell Niche and Organoids

  Sasaki, N., Sato, T. & Clevers, H., 14 Apr 2017, Biology and Engineering of Stem Cell Niches. Vishwakarma, A. & Karp, J. M. (eds.). London: Elsevier, p. 111-125 15 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Stem Cell 100%
  • Organoid 100%
  • Stem Cell Niche 100%
  • Intestinal Stem Cell 50%
  • Personalized Medicine 25%
• 2016

  Lysosome Biogenesis and Autophagy

  Reggiori, F. & Klumperman, J., 27 Jun 2016, Lysosomes: Biology, Diseases, and Therapeutics. Wiley, p. 7-31 25 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Lysosome 100%
  • Autophagy 100%
  • Biogenesis 100%
  • Lysosomal Membrane Protein 25%
  • Hydrolase 25%

• Tomo-seq: A method to obtain genome-wide expression data with spatial resolution

  Kruse, F., Junker, J. P., van Oudenaarden, A. & Bakkers, J., 2016, The Zebrafish Genetics, Genomics, and Transcriptomics. Detrich, H. W., Westerfield , M. & Zon, L. I. (eds.). Academic Press Inc., p. 299-307 9 p. (Methods in Cell Biology; vol. 135).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Zebra fish 100%
  • In Situ Hybridization 50%
  • Transcriptomics 50%
  • RNA Sequence 50%
  • RNA Sequencing 50%
• 2015

  Intra-Golgi Transport

  Aguilera Gomez, A. & Rabouille, C., 1 Jan 2015, Organizational Cell Biology. Elsevier, Vol. 2. p. 354-362 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

  • Secretory Pathway 100%
  • Cell Membrane 50%
  3 Citations (Scopus)
• 2012

  Identification of Ubiquitin System Factors in Growth Hormone Receptor Transport

  Translated title of the contribution: Identification of Ubiquitin System Factors in Growth Hormone Receptor TransportSlotman, J. A., van Kerkhof, P. J. M., Hassink, G. C., Strous, G. J. A. M. & Kuiken, H. J., 2012, Molecular Regulation of Endocytosis. Ceresa, B. (ed.). InTech, p. 391-410 20 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2011

  Generation of Genetically Modified Rodents Using Random ENU Mutagenesis

  Translated title of the contribution: Generation of Genetically Modified Rodents Using Random ENU Mutagenesisvan Boxtel, R. & Cuppen, E. P. J. G., 2011, Transgenic Mouse Methods and Protocols. Humana Press, p. 295-308 14 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic
• 2010

  Investigation of the ultrastructure of yeast using cryo-immuno-electron microscopy

  Translated title of the contribution: Investigation of the ultrastructure of yeast using cryo-immuno-electron microscopyMari, M. C., Griffith, J. M. & Reggiori, F. M., 2010, Microscopy: Science, Technology, Applications and Education. Méndez-Vilas, A. & Díaz, J. (eds.). Badojoz: Formatex Research Center, p. 11-18 8 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic
• 2008

  Cryo-fixation, freeze-substitution, rehydration and Tokuyasu cryo-sectioning

  Translated title of the contribution: Cryo-fixation, freeze-substitution, rehydration and Tokuyasu cryo-sectioningStierhof, Y. D., van Donselaar, E. G., Schwarz, H. & Humbel, B. M., 2008, Handbook for cryo-preparation methods for electron microscopy. Boca Raton, USA: Cavalier, A., Spehner, D. and Humbel, B.M. (eds). CRC Press Inc., p. 343-365 23 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• LA2. - Die Happy? – Live Longer? Or how to manipulate the GH/IGF-1 axis?

  Translated title of the contribution: LA2. - Die Happy? – Live Longer? Or how to manipulate the GH/IGF-1 axis?van Rossum, A. G. S. H., Hek, K., Viëtor, H. & Strous, G. J. A. M., 2008, www.rubicon-net.org. Rubicon Network of excellence

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

• The exocytic pathway and development. Review

  Translated title of the contribution: The exocytic pathway and development. ReviewSchotman, H. H. M. & Rabouille, C., 2008, “Protein Trafficking: Mechanisms and Regulation”.. Nava Segev, Landes Bioscience (ed.). Landes Bioscience

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2004

  Pull-down assays for guanoside 5'-triphosphate-bound ras-like guanosine 5'-triphosphatases

  Translated title of the contribution: Pull-down assays for guanoside 5'-triphosphate-bound ras-like guanosine 5'-triphosphatasesvan Triest, M. & Bos, J. L., 2004, Methods in Molecular Biology. Seger, R. (ed.). Totowa, NJ: Humana Press Inc., p. 97-102 6 p. (250).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Receptor mutagenesis strategies for examination of structure-function relationships.

  Translated title of the contribution: Receptor mutagenesis strategies for examination of structure-function relationships.Blomenröhr, M., Vischer, H. F. & Bogerd, J., 2004, Receptor Signal Transduction Protocols.. Willars, G. B. & Challiss, R. A. J. (eds.). Totowa, USA: Humana Press, p. 307-322 16 p. (Second Edition of the Methods in Molecular Biology series.).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• The eukaryotic Ccr4-Not complex: a regulatory platform integrating mRNA metabolism with cellular signaling pathways?

  Translated title of the contribution: The eukaryotic Ccr4-Not complex: a regulatory platform integrating mRNA metabolism with cellular signaling pathways?Collart, M. A. & Timmers, H. T. M., 2004, Progress in Nucleic Acid Research and Molecular Biology. Moldave, K. (ed.). USA: Elsevier Academic Press, p. 289-322 366 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2003

  Adenovirus DNA replication: protein priming, jumping back and the role of the DNA binding protein DBP

  Translated title of the contribution: Adenovirus DNA replication: protein priming, jumping back and the role of the DNA binding protein DBPde Jong, R. N., van der Vliet, P. C. & Brenkman, A. B., 2003, Adenoviruses: Model and Vectors in Virus-Host Interactions. Doerfler, W. & Bohm, P. (eds.). Heidelberg: Springer Verlag Berlin, p. 187-211 454 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional

• Glycosphingolipid translocation by multidrug resistance P-glycoproteins?

  Translated title of the contribution: Glycosphingolipid translocation by multidrug resistance P-glycoproteins?van Meer, G., Raggers, R. J., Sprong, H., van der Sluijs, P., van Helvoort, A., Kojima, K., Vogels, I. & Borst, P., 2003, Commemorative booklet Mizutani Foundation for Glycoscience. Tokyo

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional
• 2002

  Spermatogonial stem cell development.

  Translated title of the contribution: Spermatogonial stem cell development.de Rooij, D. G., Creemers, L. B., den Ouden, K. & Izadyar, F., 2002, Testicular tangrams. Rommerts, F. F. G. & Teerds, K. J. (eds.). p. 121-138 18 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

• The many levels of control of IGF-II expression

  Translated title of the contribution: The many levels of control of IGF-II expressionHolthuizen, P., 2002, Insulin-Like growth factors. Derek Roit, L., Walter Zumkeller & Robert Baxter (eds.). Eurekah.dom

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional

• Ubiquitin system-dependent regulation of growth hormone receptor signal transduction and effects of oxidative stress.

  Translated title of the contribution: Ubiquitin system-dependent regulation of growth hormone receptor signal transduction and effects of oxidative stress.Strous, G. J. A. M. & Alves dos Santos, M. C., 2002, The ubiquitin-proteasome proteolytic pathway - from classical biochemistry to human diseases. Recent advances of human biology.. Ciechanover, A. J. & Masucci, M. G. (eds.). World Scientific, p. 163-188 26 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional
• 2001

  Endocytosis and antigen presentation

  Translated title of the contribution: Endocytosis and antigen presentationKleijmeer, M. J. & Raposo, G., 2001, Endocytosis. Oxford University Press, p. 168-203 316 p. (Frontiers in Molecular Biology; no. 36).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• The many levels of control of IGF-II expression

  Translated title of the contribution: The many levels of control of IGF-II expressionvan Dijk, E. L. & Holthuizen, P., 2001, mRNA binding proteins. Sandberg, K. & Mulroney, S. (eds.). MA: Kluwer Academic Publishers

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 2000

  Forkhead Transcription factors: new targets of protein kinase B (C-Akt) signalling

  Translated title of the contribution: Forkhead Transcription factors: new targets of protein kinase B (C-Akt) signallingKops, G. J. P. L. & Burgering, B. M. T., 2000, Molecular Mechanisms of signal Transduction. Prof.dr. Bos, J. L. (ed.). Amsterdam: IOS Press, 285 p. (A; no. 316).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Interconnectivity of the small GTPAses Ras and Ral

  Translated title of the contribution: Interconnectivity of the small GTPAses Ras and RalBos, J. L., 2000, Molecular Mechanisms of Signal Transduction. Prof.dr. Bos, J. L. (ed.). Amsterdam: IOS Press, 285 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Negative growth regulation of SK-N-MC cellls by bFGF defines a growth factor-sensitive point in G2

  Translated title of the contribution: Negative growth regulation of SK-N-MC cellls by bFGF defines a growth factor-sensitive point in G2Smits, V. A. J., van Peer, M. A., Essers, M. A. G., Klompmaker, R., Rijksen, G. & Medema, R. H., 2000, Molecular Mechanisms of signal transduction. Prof.dr. Bos, J. L. (ed.). Amsterdam: IOS Press, 285 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Rap1, a Ras-like GTPase with a Distinct Function

  Translated title of the contribution: Rap1, a Ras-like GTPase with a Distinct FunctionBos, J. L., 2000, Molecular Mechanisms of Signal Transduction. Prof.dr. Bos, J. L. (ed.). Amsterdam: IOS Press, 285 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Ras

  Translated title of the contribution: RasBos, J. L., 2000, GTPases. Hall, A. (ed.). Oxford: Oxford University Press, p. 67-88 21 p. (Frontiers in Molecular Biology).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional

• Regulation of the differentiation of the undifferentiated spermatogonia

  Translated title of the contribution: Regulation of the differentiation of the undifferentiated spermatogoniade Rooij, D. G., Schrans-Stassen, B. H. G. J., van Pelt, A. M. M., Shuttlesworth, G. A., Meistrich, M. L., Okabe, M. & Nishimune, Y., 2000, The Testis: From Stem Cell to Sperm Function. Goldberg, E. (ed.). New York: Springer-Verlag, p. 43-54 12 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review
• 1999

  Regulation of apoptosis in the testis

  Translated title of the contribution: Regulation of apoptosis in the testisBeumer, T. L. & de Rooij, D. G., 1999, Male sterility for motility disorders: etiological factors and treatment. Hamamah, S., Mieusset, R., Olivenes, F., Jouannet, P. & Frydman, R. (eds.). New York: Springer-Verlag, 10 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• The IGF System

  Translated title of the contribution: The IGF SystemHolthuizen, P., Steenbergh, P. H. & Sussenbach, J. S., 1999, Molecular Biology, Physiology and Clinical Applications. Rosenfeld, R. G. & Roberts Jr, C. T. (eds.). Totowa, New Jersey: Humana Press, 25 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional
• 1998

  Characterization and quantification of ultrasonographically observed fetal movements during the last ten days of gestation in the pig

  Translated title of the contribution: Characterization and quantification of ultrasonographically observed fetal movements during the last ten days of gestation in the pigCohen, S., Mulder, E. J. H., van Oord, H. A., Jonker, E. H., van der Weijden, G. C. & Taverne, M. A. M., 1998, Abstracts 25th Annual Meeting of the Fetal and Neonatal Physiological Society, UCLA Conference Center, Lake Arrowhead, CA, USA, September 13-16.. p. A-61 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

• Continuous Doppler fetal heart rate monitoring in the near term bovine fetus: comparison of 30 and 60 min computer evaluated records

  Translated title of the contribution: Continuous Doppler fetal heart rate monitoring in the near term bovine fetus: comparison of 30 and 60 min computer evaluated recordsJonker, E. H., van Oord, H. A., Mulder, E. J. H. & Taverne, M. A. M., 1998, Proceedings of Annual Meeting of the Society for Theriogenology, Baltimore, MD, USA, December 4-6. p. A-160-A-161 2 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

• Immunohistochemical localization of Fas receptor and Fas ligand in normal and malignant human ovaries

  Translated title of the contribution: Immunohistochemical localization of Fas receptor and Fas ligand in normal and malignant human ovariesGhahremani, M., Sie-Go, D. M. D. S., Heintz, A. P. M., van der Donk, J. A. W. M., Dorrington, K. J. & Teerds, K. J., 1998, Proceedings XIthe Int Workshop on the Development and function of the reproductive organs (Serono), Amsterdam April 16-18, 1998. p. 1 pp 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic

• Signal transduction by the receptor tyrosine kinase Ret

  Translated title of the contribution: Signal transduction by the receptor tyrosine kinase Retvan Weering, D. H. & Bos, J. L., 1998, Recent Results in Cancer Research. Schwab, O., Hofschneider, O., Munk, O. & Rabes, O. (eds.). USA: Munk and Rabes, 10 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional
• 1997

  A refined NMR solution structure of the POU-specific domain of the human Oct-1 protein

  Translated title of the contribution: A refined NMR solution structure of the POU-specific domain of the human Oct-1 proteinCox, M., Dekker, N., Boelens, R., van Leeuwen, H. C., van der Vliet, P. C. & Kaptein, R., 1997, Dynamics and the problem of recognition in biological macromolecules. Jardetzky, O. & Lefevre, F. (eds.). New York: Plenum Press, p. 223-236 14 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Immunogold labeling of ultrathin cryosections: Application in immunology

  Translated title of the contribution: Immunogold labeling of ultrathin cryosections: Application in immunologyRaposo, G., Kleijmeer, M. J., Posthuma, G., Slot, J. W. & Geuze, H. J., 1997, Handbook of Exp. Immunol.. Herzenberg, L. A., Weir, D. M., Slot, J. W. & Blackwell, C. (eds.). Malden: Blackwell Science Inc., p. 1-11 11 p. (5th edition, volume 4; no. 208).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Muscle damage induced by exercise: nature, prevention and repair

  Translated title of the contribution: Muscle damage induced by exercise: nature, prevention and repairBär, P. R., Reijneveld, J. C., Wokke, J. H. J., Jacobs, S. C. J. M. & Bootsma, A. L., 1997, Muscle Damage. Ed. Salmons, S. (ed.). Oxford: Oxford University Press, 27 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Professional

• Muscle damage induced by exercise: nature, prevention and repair

  Translated title of the contribution: Muscle damage induced by exercise: nature, prevention and repairBär, P. R., Reijneveld, J. C., Wokke, J. H. J., Jacobs, S. C. J. M. & Bootsma, A. L., 1997, Muscle Damage. Salmons, S. (ed.). New York, Tokyo: Oxford Medical Publications, p. 1-28 28 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Non-invasive monitoring of the fetal heart rate during the last ten days of gestatin in the pig

  Translated title of the contribution: Non-invasive monitoring of the fetal heart rate during the last ten days of gestatin in the pigCohen, S., Mulder, E. J. H., van Oord, H. A., Jonker, E. H., van der Weijden, G. C. & Taverne, M. A. M., 1997, Proceedings 24th Annual Meeting of the Society for the Study of Fetaland Neonatal Physiology. Margherita Ligure, S. (ed.). p. P-5 1 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Regulation and proliferation of stem cells in the male germ line

  Translated title of the contribution: Regulation and proliferation of stem cells in the male germ linede Rooij, D. G. & van Dissel-Emiliani, F. M. F., 1997, Current Book Contents. Potter, C. S. (ed.). London: Acad. Press Ltd., p. 283-313 31 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• Secretory lysosomes and the production of exosomes

  Translated title of the contribution: Secretory lysosomes and the production of exosomesRaposo, G., Vidal, M. & Geuze, H. J., 1997, Unusual secretory pathways: from bacteria to man. Kuchler, K., Rubartelli, A. & Holland, B. (eds.). Austin, Texas: R.G. Landes Bioscience, p. 161-184 24 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review

• The role of small GTPases in signal transduction

  Translated title of the contribution: The role of small GTPases in signal transductionBos, J. L., Baas, P. D., Burgering, B. M. T., Franke, B., Peppelenbosch, M. P., M'Rabet, L., Spaargaren, M., van Mansfeld, A. D. M., van Weering, D. H., Wolthuis, R. M. F. & Zwartkruis, F., 1997, Molecular Mechanisms of Signalling and Membrane Transport. Wirtz, K. W. A. (ed.). Berlin: Springer-Verlag, p. 63-73 11 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › Academic › peer-review